Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11781130 chr8:121473656 A/G 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs117816932 chr10:29831576 C/T 5.57E-11 175 25.6 22.05 10.3 KM Plot
PCPG rs117845382 chr7:105152040 T/C 5.56E-5 177 20.17 29.43 2.28 KM Plot
PCPG rs117850520 chr10:69583400 A/G 0 171 25.87 16.97 2.28 KM Plot
PCPG rs11786027 chr8:121527419 T/C 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs117869709 chr9:36134258 G/C 0 170 25.53 30.67 2.93 KM Plot
PCPG rs117874838 chr10:29827402 A/G 7.42E-11 173 25.6 22.05 10.3 KM Plot
PCPG rs117880578 chr16:89910230 C/G 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs117914317 chr10:69604264 C/T 0 173 25.87 18.2 2.28 KM Plot
PCPG rs117916879 chr10:69732684 G/C 0 177 25.87 18.2 2.28 KM Plot
PCPG rs117955236 chr5:1523543 C/G 0.000197 170 25.87 20.25 13.17 KM Plot
PCPG rs117986187 chr7:105167311 G/A 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs117995650 chr10:69747463 C/G 0 177 25.87 18.2 2.28 KM Plot
PCPG rs11806745 chr1:40501987 C/T 6.64E-5 175 25 24.23 25.53 KM Plot
PCPG rs118122685 chr16:71633094 G/A 8.94E-6 177 24.23 30.93 14.5 KM Plot